Studying the secretion mechanisms of virulence proteins produced by Gram-negative bacteria

Pathogenic Gram-negative bacteria produce virulence proteins and deliver them to their cell surface to establish and sustain infections in humans. Because these virulence proteins have unique structures not found in humans, they are viewed as potential drug targets. Thus, understanding how Gram-negative bacteria deliver virulence proteins to the cell surface could lead to the development of novel antibiotics that selectively target these virulence proteins.  However, how exactly bacteria deliver virulence proteins to the cell surface remains unclear. The Clark lab strives to better understand the mechanisms that bacteria use to successfully deliver virulence proteins to the cell surface. For this project, the undergraduate researcher will work under the guidance of a graduate student to help identify and characterize features within the virulence proteins that potentially facilitate their delivery to the bacterial cell surface. The undergraduate researcher will learn important research skills, and biophysical and biochemical techniques, which they can use to design and conduct any additional undergraduate thesis research if required by their program.

Name of research group, project, or lab
Clark Lab
Why join this research group or lab?

The Clark lab is a diverse group with a broad range of scientific backgrounds. We use cellular biology, biochemistry, and biophysics approaches to study how proteins, the powerhouse of living cells, fold correctly into their 3D structure to achieve their functions. 

Logistics Information:
Project categories
Chemistry and Biochemistry
Student ranks applicable
Sophomore
Junior
Student qualifications

To successfully participate in this project, the applicant should have completed all required freshman courses in chemistry, biology, biochemistry, or closely related majors. Students completing premedical studies or other pre-health studies are also welcome to apply. 

All work will be performed in the laboratory settings. 

Hours per week
3 credits / 12+ hours
Compensation
Research for Credit
Number of openings
1
Techniques learned

Gel electrophoresis, western blotting, cell culture, heat shock transformation, Polymerase Chain Reaction (PCR ), protein purification, and more.

Project start
Fall 2024
Contact Information:
Mentors
cmukinay@nd.edu
Graduate Student
pclark1@nd.edu
Principal Investigator
Name of project director or principal investigator
Patricia Clark
Email address of project director or principal investigator
pclark1@nd.edu
1 sp. | 5 appl.
Hours per week
3 credits / 12+ hours
Project categories
Chemistry and Biochemistry